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1

Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data

François Sabot, Nathalie Picault, Moaine El-Baidouri, Christel Llauro, Cristian Chaparro, Benoit Piegu, Anne Roulin, Emmanuel Guiderdoni, Mélissa Delabastide, Richard McCombie, Olivier Panaud

Journal:

The Plant Journal

Year:

2011

Language:

english

File:

PDF, 236 KB

english, 2011

2

Microsatellite marker development, mapping and applications in rice genetics and breeding

Susan R. McCouch, Xiuli Chen, Olivier Panaud, Svetlana Temnykh, Yunbi Xu, Yong Gu Cho, Ning Huang, Takashige Ishii, Matthew Blair

Journal:

Plant Molecular Biology

Year:

1997

Language:

english

File:

PDF, 196 KB

english, 1997

3

Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8

Clementine Vitte, Cristian Chaparro, Hadi Quesneville, Olivier Panaud

Journal:

Year:

2007

Language:

english

File:

PDF, 1.25 MB

english, 2007

4

Isolation and characterisation of a bacterial strain degrading the herbicide sulcotrione from an agricultural soil

Christophe Calvayrac, Fabrice Martin-Laurent, Alexia Faveaux, Nathalie Picault, Olivier Panaud, Camille-Michel Coste, Hanene Chaabane, Jean-François Cooper

Journal:

Pest Management Science

Year:

2012

Language:

english

File:

PDF, 188 KB

english, 2012

5

Assessment of genetic relationships among sexual and asexual forms of Allium cepa using morphological traits and RAPD markers

D'Ennequin, Maud Le Thierry, Panaud, Olivier, Robert, Thierry, Ricroch, Agnès

Journal:

Year:

1997

Language:

english

File:

PDF, 191 KB

english, 1997

6

Retrotranspositional landscape of Asian rice revealed by 3000 genomes

Carpentier, Marie-Christine, Manfroi, Ernandes, Wei, Fu-Jin, Wu, Hshin-Ping, Lasserre, Eric, Llauro, Christel, Debladis, Emilie, Akakpo, Roland, Hsing, Yue-Ie, Panaud, Olivier

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.70 MB

english, 2019

7

A unified classification system for eukaryotic transposable elements

Wicker, Thomas, Sabot, François, Hua-Van, Aurélie, Bennetzen, Jeffrey L., Capy, Pierre, Chalhoub, Boulos, Flavell, Andrew, Leroy, Philippe, Morgante, Michele, Panaud, Olivier

Journal:

Nature Reviews Genetics

Year:

2007

Language:

english

File:

PDF, 596 KB

english, 2007

8

Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza

Anne Roulin, Benoît Piegu, Rod A. Wing, Olivier Panaud

Journal:

The Plant Journal

Year:

2008

Language:

english

File:

PDF, 551 KB

english, 2008

9

Dynamic conservation of apricotPrunus armeniacain saharian oases: use of AFLP markers to assess genetic diversity in traditional orchards

Olivier Panaud, Anissa Chaib, Aboubakry Sarr

Journal:

Year:

2002

Language:

english

File:

PDF, 69 KB

english, 2002

10

DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses

Wicker, Thomas, Yu, Yeisoo, Haberer, Georg, Mayer, Klaus F. X., Marri, Pradeep Reddy, Rounsley, Steve, Chen, Mingsheng, Zuccolo, Andrea, Panaud, Olivier, Wing, Rod A., Roffler, Stefan

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.43 MB

english, 2016

11

RDA derivedOryza minuta-specific clones to probe genomic conservation acrossOryzaand introgression into rice (O. sativaL.)

Junghyun Shim, Olivier Panaud, Clémentine Vitte, Merlyn S. Mendioro, Darshan S. Brar

Journal:

Year:

2010

Language:

english

File:

PDF, 726 KB

english, 2010

12

A protocol for non-radioactive DNA labelling and detection in the RFLP analysis of rice and tomato using single-copy probes

Olivier Panaud, Gerard Magpantay, Susan McCouch

Journal:

Plant Molecular Biology Reporter

Year:

1993

Language:

english

File:

PDF, 235 KB

english, 1993

13

Abiotic stress and genome dynamics: specific genes and transposable elements response to iron excess in rice

Finatto, Taciane, de Oliveira, Antonio, Chaparro, Cristian, da Maia, Luciano C, Farias, Daniel R, Woyann, Leomar G, Mistura, Claudete C, Soares-Bresolin, Adriana P, Llauro, Christel, Panaud, Olivier,

Journal:

Year:

2015

Language:

english

File:

PDF, 1.29 MB

english, 2015

14

Traditional management of cassava morphological and genetic diversity by the Makushi Amerindians (Guyana, South America): Perspectives for on-farm conservation of crop genetic resources

Marianne Elias, Doyle McKey, Olivier Panaud, Marie Charlotte Anstett, Thierry Robert

Journal:

Year:

2001

Language:

english

File:

PDF, 95 KB

english, 2001

15

Frequency of microsatellite sequences in rice ( Oryza sativa L.)

Panaud, Olivier, Chen, Xiuli, McCouch, Susan R.

Journal:

Year:

1995

Language:

english

File:

PDF, 572 KB

english, 1995

16

Drivers and dynamics of diversity in plant genomes

Panaud, Olivier, Jackson, Scott A., Wendel, Jonathan F.

Journal:

New Phytologist

Year:

2014

Language:

english

File:

PDF, 505 KB

english, 2014

17

A new approach for annotation of transposable elements using small RNA mapping

El Baidouri, Moaine, Kim, Kyung Do, Abernathy, Brian, Arikit, Siwaret, Maumus, Florian, Panaud, Olivier, Meyers, Blake C., Jackson, Scott A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.60 MB

english, 2015

18

Characterization of the complete plastome of Ophrys aveyronensis , a Euro-Mediterranean orchid with an intriguing disjunct geographic distribution

Bertrand, Joris A. M., Gibert, Anaïs, Llauro, Christel, Panaud, Olivier

Journal:

Mitochondrial DNA Part B

Year:

2019

File:

PDF, 1.06 MB

2019

19

Assessment of genetic relationships among sexual and asexual forms of Allium cepa using morphological traits and RAPD markers

D'ENNEQUIN, MAUD LE THIERRY, PANAUD, OLIVIER, ROBERT, THIERRY, RICROCH, AGNÈS

Journal:

Year:

1997

Language:

english

File:

PDF, 191 KB

english, 1997

20

The impact of transposable elements on the structure, evolution and function of the rice genome

Akakpo, Roland, Carpentier, Marie‐christine, Hsing, Yue Ie, Panaud, Olivier

Journal:

New Phytologist

Year:

2019

File:

PDF, 1.43 MB

2019

21

Use of non-radioactive digoxigenin-labeled DNA probes for RFLP analysis in rice

Takashige Ishii, Olivier Panaud, D. S. Brar, G. S. Khush

Journal:

Plant Molecular Biology Reporter

Year:

1990

Language:

english

File:

PDF, 337 KB

english, 1990

22

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

Clémentine Vitte, Olivier Panaud, Hadi Quesneville

Journal:

Year:

2007

Language:

english

File:

PDF, 416 KB

english, 2007

23

Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology

Debladis, Emilie, Llauro, Christel, Carpentier, Marie-Christine, Mirouze, Marie, Panaud, Olivier

Journal:

Year:

2017

Language:

english

File:

PDF, 1.06 MB

english, 2017

24

Identification of high-copy number long terminal repeat retrotransposons and their expansion in Phalaenopsis orchids

Hsu, Chia-Chi, Chen, Shu-Yun, Lai, Pei-Han, Hsiao, Yu-Yun, Tsai, Wen-Chieh, Liu, Zhong-Jian, Chung, Mei-Chu, Panaud, Olivier, Chen, Hong-Hwa

Journal:

Year:

2020

File:

PDF, 1.73 MB

2020

25

Diversity of the Ty-1 copia retrotransposonTos17in rice (Oryza sativaL.) and the AA genome of theOryzagenus

Julie Petit, Emmanuelle Bourgeois, Wilfried Stenger, Martine Bès, Gaétan Droc, Donaldo Meynard, Brigitte Courtois, Alain Ghesquière, François Sabot, Olivier Panaud, Emmanuel Guiderdoni

Journal:

Molecular Genetics and Genomics

Year:

2009

Language:

english

File:

PDF, 1.01 MB

english, 2009

26

A universal classification of eukaryotic transposable elements implemented in Repbase

Wicker, Thomas, Sabot, François, Hua-Van, Aurélie, Bennetzen, Jeffrey L., Capy, Pierre, Chalhoub, Boulos, Flavell, Andrew, Leroy, Philippe, Morgante, Michele, Panaud, Olivier

Journal:

Nature Reviews Genetics

Year:

2008

Language:

english

File:

PDF, 99 KB

english, 2008

27

Cloning and mapping of variety-specific rice genomic DNA sequences: amplified fragment length polymorphisms (AFLP) from silver-stained Polyacrylamide gels

Cho, Yong Gu, Blair, Matthew W., Panaud, Olivier, McCouch, Susan R.

Journal:

Year:

1996

Language:

english

File:

PDF, 558 KB

english, 1996

28

Exploration of intra- and inter-population genetic diversity inHedysarum coronariumL. by AFLP markers

Sonia Marghali, Olivier Panaud, Françoise Lamy, Salma Ghariani, Aboubakry Sarr, Mohamed Marrakchi, Neila Trifi-Farah

Journal:

Genetic Resources and Crop Evolution

Year:

2005

Language:

english

File:

PDF, 127 KB

english, 2005

29

Corrigendum: Phylogenetic relationships and selective pressure on gene families related to iron homeostasis in land plants

Victoria, Filipe de Carvalho, Bervald, Clauber Mateus Priebe, da Maia, Luciano Carlos, Farias, Daniel da Rosa, de Sousa, Rogerio Oliveira, Panaud, Olivier, Costa de Oliveira, Antônio

Journal:

Year:

2013

Language:

english

File:

PDF, 49 KB

english, 2013

30

Horizontal transfers of transposable elements in eukaryotes: The flying genes

Panaud, Olivier

Journal:

Comptes Rendus Biologies

Year:

2016

Language:

english

File:

PDF, 270 KB

english, 2016

31

Reply: A unified classification system for eukaryotic transposable elements should reflect their phylogeny

Wicker, Thomas, Sabot, François, Hua-Van, Aurélie, Bennetzen, Jeffrey L., Capy, Pierre, Chalhoub, Boulos, Flavell, Andrew, Leroy, Philippe, Morgante, Michele, Panaud, Olivier

Journal:

Nature Reviews Genetics

Year:

2009

Language:

english

File:

PDF, 107 KB

english, 2009

32

The molecular bases of cereal domestication and the history of rice

Journal:

Comptes Rendus Biologies

Year:

2009

Language:

english

File:

PDF, 126 KB

english, 2009

33

Phylogenetic relationships and selective pressure on gene families related to iron homeostasis in land plants

Victoria, Filipe de Carvalho, Bervald, Clauber Mateus Priebe, da Maia, Luciano Carlos, de Sousa, Rogerio Oliveira, Panaud, Olivier, de Oliveira, Antônio Costa, Gustafson, P.

Journal:

Year:

2012

File:

PDF, 2.63 MB

2012

34

Plant root transcriptome profiling reveals a strain-dependent response during Azospirillum-rice cooperation

Drogue, BenoÃ®t, Sanguin, HervÃ©, Chamam, Amel, Mozar, Michael, Llauro, Christel, Panaud, Olivier, Prigent-Combaret, Claire, Picault, Nathalie, Wisniewski-DyÃ©, Florence

Journal:

Frontiers in Plant Science

Year:

2014

Language:

english

File:

PDF, 1.26 MB

english, 2014

35

QTL Mapping Combined With Comparative Analyses Identified Candidate Genes for Reduced Shattering in Setaria italica

Odonkor, Sandra, Choi, Soyeon, Chakraborty, Debkanta, Martinez-Bello, Liliam, Wang, Xuewen, Bahri, Bochra A., Tenaillon, Maud I., Panaud, Olivier, Devos, Katrien M.

Journal:

Frontiers in Plant Science

Year:

2018

Language:

english

File:

PDF, 2.12 MB

english, 2018

36

Horizontal transfer of transposable elements in plants

Fortune, Philippe M., Roulin, Anne, Panaud, Olivier

Journal:

Communicative & Integrative Biology

Year:

2008

Language:

english

File:

PDF, 441 KB

english, 2008

37

Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposonRoute66inPoaceae

Anne Roulin, Benoit Piegu, Philippe M Fortune, François Sabot, Angélique D'Hont, Domenica Manicacci, Olivier Panaud

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 732 KB

english, 2009

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